Genetic relationship of Fasciola gigantica populations in Africa: Insight from mitochondrial cox 1 genes
http://dx.doi.org/10.4314/njpar.v40i2.19
Keywords:
molecular epidemiology, genetic diversity, cox1, Africa, Fasciola giganticaAbstract
The liver fluke Fasciola gigantica is an important livestock parasite causing fascioliasis in Africa. Population genetics analysis of the mitochondrial cox1 genes of F.gigantica from seven African countries revealed two distinct genetic lineages with 41% nucleotide divergence. The first lineage comprised of populations from four countries (Egypt, Mauritania, Nigeria and Zambia) while the second lineage consisted of sequences from Niger, South Africa and Zimbabwe. Mismatch distribution analysis and neutrality tests revealed both F.gigantica lineages are in genetic equilibrium. There was also evidence of gene flow between the populations in the two lineages.The two distinct genetic lineages of F. gigantica identified may have implication for drug resistance in the treatment of fascioliasis.
References
Mas-Coma S, Valero, M. A. and Bargues, M. D. 2009. Fasciola, lymnaeidsand human fascioliasis, with a global overview on disease transmission, epidemiology, evolutionary genetics, molecular epidemiology and control. Advances in Parasitology, 69: 41-146.
Nolan, M. J. and Cribb, T. H. 2005. The use and implications of ribosomal DNA sequencing for the discrimination of digenean species. Advances in Parasitology, 60: 101-163.
Olson, P.D. and Tkach, V.V.2005. Advances and trends in the molecular systematics of the parasitic Platyhelminthes. Advances in Parasitology, 60: 165- 243.
Choudhary, K., Kumar Verma, A., Swaroop, S. and Agrawal, N. 2015. A review on the molecular characterization of digenean parasites using molecular markers with special reference to ITS region. Helminthologia, 52(3): 167-187.
Ali, H., Ai, L., Song, H. Q., Ali, S., Lin, R. Q., Seyni, B., Issa, G., Zhu, X. Q. 2008. Genetic characterisation of Fasciola samples from different host species and geographical localities revealed the existence of F. hepatica and F. gigantica in Niger. Parasitology Research, 102: 1021-1024.
Amor, N., Farjallah, S., Salem, M., Lamine, D. M., Merella, P.,Said, K. and Ben Slimane, B.2011. Molecular characterization of Fasciola gigantica from Mauritania based on mitochondrial and nuclear ribosomal DNA sequences. Experimental Parasitology, 129(2): 127-136.
Amer, S., Dar, Y., Ichikawa, M., Fukuda, Y., Tada, C., Itagaki, T. and Nakai, Y.2011. Identification of Fasciola species isolated from Egypt based on sequence analysis of genomic (ITS1 and ITS2) and mitochondrial (NDI and COI) gene markers. Parasitology International, 60(1): 5-12.
Enabulele, E. E. and Imasuen, A. A. 2016. Insight into the genetic relationship of Fasciola gigantica inferred from LSU and ITS1 ribosomal DNA. NISEB Journal, 16(1): 155-161.
Ichikawa-Seki, M., Tokashiki, M., Opara, M. N., Iroh, G., Hayashi, K., Kumar, U. M. and Itagaki, T. 2017. Molecular characterization and phylogenetic analysis of Fasciola gigantica from Nigeria. Parasitology International, 66(1): 893-897.
Iwagami, M., Ho, L. Y., Su, K., Lai, P.F.,Fukushima, M., Nakano, M., Blair, D., Kawashima, K. and Agatsuma, T. 2000. Molecular phylogeographic studies on Paragonimus westermani in Asia. Journal of Helminthology, 74(4): 315-22.
Semyenova, S. K., Morozova, E. V., Chrisanfova, G. G., Gorokhov, V. V., Arkhipov, I. A., Moskvin, A. S., Movsessyan, S. O. and Ryskov, A. P. 2006. Genetic differentiation in Eastern European and Western Asian populations of the liver fluke, Fasciola hepatica, as revealed by mitochondrial nad1 and cox1 genes. Journal of Parasitology, 92 (3): 525-530.
Shalaby, I., Gherbawy, Y. and Banaja, A. 2011. Genetic diversity among Schistosoma mansoni population in the western region of Saudi Arabia. Tropical biomedicine, 28: 90-101.
Teofanova, D., Kantzoura, V., Walker, S., Radoslavov, G., Hristov, P., Theodoropoulos, G., Bankov, I. and Trudgett, A. 2011. Genetic diversity of liver flukes (Fasciola hepatica) from Eastern Europe. Infection, Genetics and Evolution, 11: 109-115.
Walker, S. M., Johnston, C., Hoey, E. M., Fairweather, I., Borgsteede, F., Gaasenbeek, C., ProdÉhl, P. A. and Trudgett, A. 2011. Population dynamics of the liver fluke, Fasciola hepatica: the effect of time and spatial separation on the genetic diversity of fluke populations in the Netherlands. Parasitology, 138(2): 215-223.
Zhao, Q., Jiang, M., Dong, H., Nie, P. 2012. Diversification of Schistosoma japonicum in Mainland China revealed by mitochondrial DNA. PLoS neglected tropical diseases, 6: e1503.
Avise, J. 2000. Phylogeography: The History and Formation of Species. Harvard University Press, Cambridge MA, p. 464.
Galtier, N., Nabholz, B., GleÑmin, S. and Hurst, G. D. D. 2009. Mitochondrial DNA as a marker of molecular diversity: a reappraisal. Molecular ecology, 18: 4541-4550.
Librado, P. and Rozas, J. 2009. DnaSP v5: A software for comprehensive analysis of DNA polymorphism data. Bioinformatics, 25(11): 1451-1452.
Nei, M. 1973. Analysis of gene diversity in subdivided populations. Proceedings of the National Academy of Sciences, 70: 3321-3323.
Hudson, R. R., Slatkin, M. and Maddison, W. P. 1992. Estimation of levels of gene flow from DNA sequence data. Genetics, 132 (2): 583-589.
Tajima, F. 1989. Statistical method for testing the neutral mutation hypothesis by DNA polymorphism. Genetics, 123(3): 585-595.
Fu, Y.X. 1997. Statistical tests of neutrality of mutations against populationgrowth, hitchhiking and background selection. Genetics, 147: 915-925.
Rogers, A. R. and Harpending, H. 1992. Population growth makes waves in the distribution of pairwise genetic differences. Molecular Biology and Evolution, 9: 552-569.
Harpending, H. C. 1994. Signature of ancient population growth in a low-resolution mitochondrial DNA mismatch distribution. Human Biology, 66: 591-600.
Clement, M., Posada, D. and Crandall, K. A. 2000. TCS: a computer program to estimate gene genealogies. Molecular Ecology, 9(10): 1657-1659.
Leigh, J.W. and Bryant, D. 2015. POPART: full-feature software for Hlotype network construction. Methods in Ecology and Evolution, 6: 1110-1116.
Barrett, L.G., Thrall, P.H., Burdon, J.J. and Linde, C.C. 2008. Life history determines genetic structure and evolutionary potential of host–parasite interactions. Trends in Ecology and Evolution, 23(12): 678-685.
Kimura, M. 1983. The neutral theory of molecular evolution. Cambridge: Cambridge University Press.
Toews, D. P. L., Brelsford, A. 2012. The biogeography of mitochondrial and nuclear discordance in animals. Molecular Ecology 21: 3907-3930.
Loftus, R. T., MacHugh, D. E., Bradley, D. G., Sharp, P. M., Cunningham, P. 1994. Evidence for two independent domestications of cattle. Proc. Natl. Acad. Sci. USA, 91(7): 2757-2761.
Hiendleder, S., Lewalski, H. and Janke, A. 2008. Complete mitochondrial genomes of Bos taurus and Bos indicus provide new insights into intra-species variation, taxonomy and domestication. Cytogenet Genome Res., 120(1-2): 150-156.
Walker, S. M., ProdÉhl, P.A., Fletcher, H. L., Hanna, R. E. B., Kantzoura, V.,Hoey, E. M. and Trudgett, A. 2007. Evidence for multiple mitochondrial lineages of Fasciola hepatica (liver fluke) within infrapopulations from cattle and sheep. Parasitology Research, 101: 117-125.
Kelley.J. M., Elliott, T.P.,Beddoe, T., Anderson G., Skuce, P.,Spithill, T.W.2016. Current threat of triclabendazole resistance in Fasciola hepatica. Trends in Parasitology, 32: 458-469.
Beesley, N. J., Williams, D. J., Paterson, S. and Hodgkinson, J. 2017. Fasciola hepatica demonstrates high levels of genetic diversity, a lack of population structure and high gene flow: possible implications for drug resistance. International Journal of Parasitology, 47(1): 11-20.
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